PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_001338
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 182aa    MW: 19051.8 Da    PI: 8.502
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_001338genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.93.6e-43241241100
       DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +CaaCk+lrrkCa++ Cv+ap+fp ++p+kfanvhk+FGasnv k+l+++pe++r da+ss+vyeA+ar+rdPvyG+vg i+ lqqq+++l+++la +
  DCAR_001338  24 PCAACKLLRRKCAAGdCVFAPHFPPDDPSKFANVHKVFGASNVNKMLQEVPEHQRGDAVSSMVYEANARVRDPVYGCVGAISCLQQQIDTLQTQLAIA 121
                  7***********9866********************************************************************************99 PP

       DUF260  98 kee 100
                  +++
  DCAR_001338 122 QAQ 124
                  987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.76323125IPR004883Lateral organ boundaries, LOB
PfamPF031958.4E-4324122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MKLNGRKQSG AAAGGLSAAA QVSPCAACKL LRRKCAAGDC VFAPHFPPDD PSKFANVHKV  60
FGASNVNKML QEVPEHQRGD AVSSMVYEAN ARVRDPVYGC VGAISCLQQQ IDTLQTQLAI  120
AQAQVLHLRV HVAATAGQAL CASTCGSPMT SKITMSNQTK PNSNMSMVVD QGSLGDFTWS  180
C*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452830.12e-75PREDICTED: LOB domain-containing protein 4 isoform X1
SwissprotQ9SHE92e-63LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A0D2UE352e-75A0A0D2UE35_G
STRINGGLYMA20G02850.13e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52772039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.11e-56LOB domain-containing protein 4